| Retro-Mutation (12 variants) | 51 |
| Return to the Sewers (12 variants) | 52 |
| Sewer-veillance Cam (12 variants) | 53 |
| Stockman, Mad Fly-entist (12 variants) | 54 |
| Turtles in Time (12 variants) | 55 |
| Utrom Scientists (12 variants) | 56 |
| Anchovy & Banana Pizza (12 variants) | 57 |
| Armaggon, Future Shark (12 variants) | 58 |
| Bebop, Warthog Warrior (12 variants) | 59 |
| The Cloning of Shredder (12 variants) | 60 |
| Death in the Family (12 variants) | 61 |
| Dream Beavers (12 variants) | 62 |
| Foot Mystic (12 variants) | 63 |
| Insectoid Exterminator (12 variants) | 64 |
| Lord Dregg, Insect Invader (12 variants) | 65 |
| Madame Null, Power Broker (12 variants) | 66 |
| Ninja Teen (12 variants) | 67 |
| Oroku Saki, Shredder Rising (12 variants) | 68 |
| Pain 101 (12 variants) | 69 |
| Paramecia Coloniex (12 variants) | 70 |
| Rat King, Verminister (12 variants) | 71 |
| Savanti Romero, Time's Exile (12 variants) | 72 |
| Shark Shredder, Killer Clone (12 variants) | 73 |
| Shredder, Unrelenting (12 variants) | 74 |
| Shredder's Armor (12 variants) | 75 |
| Shredder's Revenge (12 variants) | 76 |
| Shredder's Technique (12 variants) | 77 |
| South Wind Avatar (12 variants) | 78 |
| Splinter, Hamato Yoshi (12 variants) | 79 |
| Splinter's Technique (12 variants) | 80 |
| Squirrelanoids (12 variants) | 81 |
| Stomped by the Foot (12 variants) | 82 |
| Super Shredder (12 variants) | 83 |
| Tunnel Rats (12 variants) | 84 |
| Bot Bashing Time (12 variants) | 85 |
| Broadcast Takeover (12 variants) | 86 |
| Casey Jones, Jury-Rig Justiciar (12 variants) | 87 |
| Casey Jones, Vigilante (12 variants) | 88 |
| Cool but Rude (12 variants) | 89 |
| General Traag, Heart of Stone (12 variants) | 90 |
| Hard-Won Jitte (12 variants) | 91 |
| Improvised Arsenal (12 variants) | 92 |
| Jennika's Technique (12 variants) | 93 |
| Manhole Missile (12 variants) | 94 |
| Mouser Attack! (12 variants) | 95 |
| Mouser Foundry (12 variants) | 96 |
| Mutant Town Musicians (12 variants) | 97 |
| Null Group Biological Assets (12 variants) | 98 |
| Old Hob, Alleycat Blues (12 variants) | 99 |
| Purple Dragon Punks (12 variants) | 100 |